change in start

#!/bin/bash -l

#

# allocate 16 nodes (64 CPUs) for 6 hours

#PBS -l nodes=4:ppn=40,walltime=01:00:00

#PBS -l nodes=4:ppn=40,walltime=16:00:00

#

# job name

#PBS -N TestAval

EXEC="$HOME/Projects/hmn-percolation/percolation"

INPUTFILE='FileReaderTestInput.txt'

SIMPATH="$HOME/Projects/hmn-percolation/Results/alpha10/20/p045"

SIMPATH="$HOME/Projects/hmn-percolation/Results/laplacianTest"

# run

HOSTN=$(hostname)

  echo  "Hi:   $SIMPATH/$INPUTFILE"

  $EXEC "$SIMPATH/$INPUTFILE"

else

  echo  "Hi:   $SIMPATH/$INPUTFILE"

  mkdir ${HOME}/$PBS_JOBID

  cd ${HOME}/$PBS_JOBID

  module load intel64

fi

# save output on parallel file system

#mkdir -p ${HOME}/codes/SIMSRC/$PBS_JOBID