preparing for cluster

bool FileReader::readFile(const std::string &name)

{

  std::cout<<name<<std::endl;

   ifstream infile(name.c_str());

   if (!infile) {

       std::cout<<"opening file failed"<<endl;

    conf.registerIntParameter("info");

    conf.registerRealParameter("epsout");

   string inputfilepath = "FileReaderTestInput.txt";

   std::cout<<argv[0]<<argv[1]<<std::endl;

    // parseparameters

    if (argc < 2) {

        // Tell the user how to run the program

        std::cerr << "Usage: you can give an input file as parameter " << std::endl;

        /* "Usage messages" are a conventional way of telling the user

         * how to run a program if they enter the command incorrectly.

         */

    }

    else {

    inputfilepath = argv[1];

  }

    //reading file

    conf.readFile("FileReaderTestInput.txt");

    conf.readFile( inputfilepath);

    conf.printParameters();

    double prob = conf.getRealParameter("prob");

#!/bin/bash -l

#

# allocate 16 nodes (64 CPUs) for 6 hours

#PBS -l nodes=4:ppn=40,walltime=16:00:00

#

# job name 

#PBS -N TestAval

#

# stdout and stderr files

#PBS -o aval.out -e aval.err

#

# first non-empty non-comment line ends PBS options

# jobs always start in $HOME -

# change to a temporary job directory on $FASTTMP

# copy input file from location where job was submitted

EXEC="$HOME/Projects/hmn-percolation/percolation"

INPUTFILE='FileReaderTestInput.txt'

SIMPATH="$HOME/Projects/hmn-percolation/Results/alpha10/20/p045"

# run

HOSTN=$(hostname)

if [ ! "${HOSTN#ww8}" == "$(hostname)" ]; then

  module load intel

  cd $SIMPATH

  echo  "Hi:   $SIMPATH/$INPUTFILE"

  $EXEC "$SIMPATH/$INPUTFILE"

else

  mkdir ${HOME}/$PBS_JOBID

  cd ${HOME}/$PBS_JOBID

  module load intel64

  module load intelmpi

  module load mkl

  mpirun_rrze -npernode 20 $EXEC -in $SIMPATH/$INPUTFILE

  cp processed_data.dat $SIMPATH

  cd

  # get rid of the temporary job dir

  rm -rf ${HOME}/$PBS_JOBID

fi

# save output on parallel file system

#mkdir -p ${HOME}/codes/SIMSRC/$PBS_JOBID